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I have a Shiny application of the following structure, where the following code is named app.R
library(shiny)
ui <- fluidPage(
theme = shinytheme("darkly"),
navbarPage(title = "Teste ",
tabPanel("Renderizar Rmarkdown em outra aba",
actionButton("teste", "Teste app dentro app"))
))
server <- function(input, output) {
observeEvent(input$teste, {
rmarkdown::run ("arquivo.Rmd")
})
}
Inside Shiny there is the execution of a flexdashboard, via rmarkdown :: run
, because the flexdashboard contains the parameter runtime:shiny
where what has been termed arquivo.Rmd
, has the following structure
---
title: "Gene Expression Biclustering"
author: "Bryan Lewis"
output:
flexdashboard::flex_dashboard:
orientation: rows
social: menu
source_code: embed
runtime: shiny
---
```{r global, include=FALSE}
# load data in 'global' chunk so it can be shared by all users of the dashboard
library(biclust)
data(BicatYeast)
set.seed(1)
res <- biclust(BicatYeast, method=BCPlaid(), verbose=FALSE)
```
Inputs {.sidebar}
-----------------------------------------------------------------------
```{r}
selectInput("clusterNum", label = h3("Cluster number"),
choices = list("1" = 1, "2" = 2, "3" = 3, "4" = 4, "5" = 5),
selected = 1)
```
Microarray data matrix for 80 experiments with Saccharomyces Cerevisiae
organism extracted from R's `biclust` package.
Sebastian Kaiser, Rodrigo Santamaria, Tatsiana Khamiakova, Martin Sill, Roberto
Theron, Luis Quintales, Friedrich Leisch and Ewoud De Troyer. (2015). biclust:
BiCluster Algorithms. R package version 1.2.0.
http://CRAN.R-project.org/package=biclust
Row
-----------------------------------------------------------------------
### Heatmap
```{r}
num <- reactive(as.integer(input$clusterNum))
col = colorRampPalette(c("red", "white", "darkblue"), space="Lab")(10)
renderPlot({
p = par(mai=c(0,0,0,0))
heatmapBC(BicatYeast, res, number=num(), xlab="", ylab="",
order=TRUE, useRaster=TRUE, col=col)
par(p)
})
```
Row {.tabset}
-----------------------------------------------------------------------
### Parallel Coordinates
```{r}
renderPlot(
parallelCoordinates(BicatYeast, res, number=num())
)
```
### Data for Selected Cluster
```{r}
# only display table for values in cluster 4
renderTable(
BicatYeast[which(res@RowxNumber[, num()]), which(res@NumberxCol[num(), ])]
)
```
I created another code, with the following data, where I made one. bat to it, and a shortcut on my desktop, and by clicking the shortcut , the app opens directly on Chrome
library(shiny)
runApp("C:\\Users\\holiveira\\Desktop\\trabalhando\\teste", launch.browser = TRUE)
The big problem is I couldn’t make one Shiny
execute a .Rmd
with runtime: shiny
I would like a solution for my shinyapp actionbutton to run this flexdashboard in another browser tab
Try to put
runtime: shiny
aboveoutput
in the headerYAML
.– neves
It did not work, apparently there is a limitation of running a Shiny inside another Shiny, I thought of trying via code run through another session, but I still could not. An output is to climb several Shiny to shinyapps.io, and create a button screen that directs to the shiny link, but this would be very expensive, if it could run straight would be ideal Warning: Error in <Anonymous>: Can’t call
runApp()
from WithinrunApp()
. If your application code containsrunApp()
, Please remove it.– Henrique Faria de Oliveira