1
run in Ubuntu the following line:
needle alvo.txt modelo.txt
when running it displays these lines:
Needleman-Wunsch global alignment of two sequences
I need to enter to go as default in this:
Gap opening penalty [10.0]:
and in that:
Gap extension penalty [0.5]:
and one more enter to have the final file on that line :
Output alignment [hba_human.needle]:
how to put these commands to be executed in php code?
tried running the command shell_exec ('needle alvo.txt modelo.txt')
the problem is that the program is not an executable of a line need to give the Enters to go as default the other lines.
https://stackoverflow.com/a/10666844
– bfavaretto